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Fair enough - I've had some good experience pointing new R users to R in a Nutshell - but maybe Data Manipulation with R is better. Haven't used it and will take a look.

One invaluable resource I forgot to point out was: http://www.statmethods.net/ Very concise, directed pages that help you understand common/acceptable ways to do specific things.

For plotting, I usually skip the base R plots and go with ggplot2.



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